ARCIMBOLDO-SHREDDER

[CONNECTION]
distribute_computing = local_grid
remote_frontend_passkey = ~/.ssh/id_rsa
setup_bor_path = /xtal/cri4-software/borges/PY/current_setup.bor

[GENERAL]
mtz_p1_path = 
ent_path = /localdata1/TEST_TERESA/data_teresa/partial.ent
pdb_path = 
working_directory = /localdata1/TEST_TERESA/TEST_PHASER29
mtz_path = /localdata1/TEST_TERESA/data_teresa/tere2.mtz
hkl_path = /localdata1/TEST_TERESA/data_teresa/tere2.hkl

[ANOMALOUS]
hkl_fa_path = none
ins_fa_path = none
expphasing = none
nsites_expected = 0
ha_present_in_native = False
recycle_ha = False
sfac = none
dsul = 0
specialpos = False
rootanom = none
dano_label = none
sigdano_label = none
nat_path = none
peak_path = none
infl_path = none
hrem_path = none
lrem_path = none
sir_path = none
sira_path = none
before_path = none
after_path = none
minusz = False

[ARCIMBOLDO-SHREDDER]
formfactors = FORMFACTORS XRAY
aniso = True
clusters = all
n_clusters = 4
f_p1_label = 
sigf_p1_label = 
number_of_component_p1 = 
rotation_clustering_algorithm = rot_matrices
threshold_algorithm = 15
rmsd_shredder = 1.0
rmsd_arcimboldo = 0.8
resolution_rotation_shredder = 1.0
resolution_rotation_arcimboldo = 1.0
sampling_rotation_shredder = -1
sampling_rotation_arcimboldo = -1
resolution_translation = 1.0
sampling_translation = -1
resolution_refinement = 1.0
resolution_gyre = 1.0
sampling_refinement = -1
exclude_llg = 0
exclude_zscore = 0
spacegroup = 
use_packing = True
solution_sorting_scheme = LLG
number_cycles_model_refinement = 2
fragment_to_search = 1
randomize_trans_per_rot = 0
tncs = True
pack_clashes = 10
prioritize_phasers = True
nma = False
rotation_model_refinement = BOTH
step_rmsd_decrease_gyre = 0.2
nma_p1 = False
vrms = True
vrms_gyre = False
bfac = False
sigr = 0.0
sigt = 0.0
pack_tra = False
base_sum_from_wd = True
gimble = True
gyre_preserve_chains = False
bulk_fsol = -1
bulk_bsol = -1
nice = 0
test_method = BRF
test_sol = 
test_txt = 
init_location = EULER 0 0 0 FRAC 0 0 0
shred_llg = False
shred_method = spherical
sphere_definition = default 1 remove_coil 7 4 0.45 0.3
community_clustering = fastgreedy True True
bfacnorm = True
alixe = true
alixe_mode = one_step
cut_alpha_comb = 0
cut_beta_comb = 0
cut_ss_comb = 3
shred_range = 4 20 1 omit all
mend_after_translation = False
parameters_borges_matrix = 50,40,2.5,1
reference_to_fix_location = 
skip_omit = False
occ = False
prioritize_occ = True
trim_to_polyala = True
maintaincys = False
sampling_gyre = -1
applytopnamefilter = True
nodminitcc = True
phs_fom_statistics = False
savephs = True
archivingasbigfile = False
filter_clusters_after_rot = True
extend_with_random_atoms = False
extend_with_secondary_structure = False
parameters_elongation = 4.8 60 150
search_inverted_helix = False
search_inverted_helix_from_fragment = -1
top_inverted_solution_per_cluster = 1000
topfrf = 200
topftf = 70
toppack = -1
toprnp = 200
topexp = 40
force_core = -1
force_nsol = -1
force_exp = False
ellg_target = 30
coiled_coil = False
swap_model_after_translation = 
stop_if_solved = True
name_job = tere_shredsphere_phaser28
molecular_weight = 70153
f_label = F
sigf_label = SIGF
number_of_component = 1
model_file = /localdata1/TEST_TERESA/data_teresa/1qsacut.pdb
shelxe_line = -m10 -a8 -s0.6 -v0 -t10 -q -o -y2.10
shelxe_line_last = -m10 -a1 -s0.55 -v0 -t10 -q -o -y2.10 -e1.60

[LOCAL]
path_local_phaser = phenix.phaser
path_local_shelxe = shelxe
path_local_arcimboldo = ARCIMBOLDO_BORGES

Log file has not been found.Timestamp information

Time MODE: ARCIMBOLDO-SHREDDER STEP: CREATE_LINK 2018-07-09 16:39