Borges started at: 2016-11-24 14:24.

=============================INPUT FILE /data/ana/2y8p_mpe/2y8p.bor=============================

[CONNECTION]
distribute_computing = local_grid
remote_frontend_passkey = ~/.ssh/id_rsa
setup_bor_path = /xtal/cri4-software/borges/PY/setup.bor

[GENERAL]
mtz_p1_path = 
ent_path = /cri4/ana/Downloads/2y8p.ent
pdb_path = 
working_directory = /data/ana/2y8p_mpe
mtz_path = %(working_directory)s/2y8p.mtz
hkl_path = %(working_directory)s/2y8p_4.hkl

[ARCIMBOLDO-SHREDDER]
clusters = all
f_p1_label = 
sigf_p1_label = 
number_of_component_p1 = 
rotation_clustering_algorithm = rot_matrices
threshold_algorithm = 15
rmsd_shredder = 1.2
rmsd_arcimboldo = 0.8
resolution_rotation_shredder = 1.0
resolution_rotation_arcimboldo = 1.0
sampling_rotation_shredder = -1
sampling_rotation_arcimboldo = -1
resolution_translation = 1.0
sampling_translation = -1
resolution_refinement = 1.0
resolution_gyre = 1.0
sampling_refinement = -1
exclude_llg = 0
exclude_zscore = 0
spacegroup = 
use_packing = True
solution_sorting_scheme = AUTO
number_cycles_model_refinement = 2
fragment_to_search = 2
randomize_trans_per_rot = 0
tncs = True
pack_clashes = 3
pack_distance = 3.0
prioritize_phasers = True
nma = False
rotation_model_refinement = BOTH
nma_p1 = False
vrms = False
bfac = False
sigr = 0.0
sigt = 0.0
pack_tra = False
base_sum_from_wd = True
gimble = False
gyre_preserve_chains = False
bulk_fsol = -1
bulk_bsol = -1
nice = 0
test_method = BRF
test_sol = 
test_txt = 
init_location = EULER 0 0 0 FRAC 0 0 0
shred_llg = True
sphere_definition = default 1 fragment remove_coil all aleph
community_clustering = fastgreedy 20 0
bfacnorm = True
alixe = False
alixe_mode = one_step
cut_alpha_comb = 0
cut_beta_comb = 0
cut_ss_comb = 3
shred_method = sequential
shred_range = 4 20 1 omit all
mend_after_translation = False
parameters_borges_matrix = 50,40,2.5,1
reference_to_fix_location = 
skip_omit = False
occ = False
prioritize_occ = True
trim_to_polyala = True
maintaincys = False
sampling_gyre = -1
applytopnamefilter = True
nodminitcc = True
phs_fom_statistics = False
savephs = False
archivingasbigfile = False
modify_shelxe_line = True
filter_clusters_after_rot = True
extend_with_random_atoms = False
extend_with_secondary_structure = False
parameters_elongation = 4.8 60 150
topfrf = 200
topftf = 70
toppack = -1
toprnp = 200
topexp = 40
force_core = -1
force_nsol = -1
force_exp = False
ellg_target = 60
name_job = 2y8p
molecular_weight = 20000
i_label = IOBS
sigi_label = SIGIOBS
number_of_component = 2
model_file = /data/ana/2y8p_mpe/1qte.pdb
shelxe_line = -m15 -a8 -s0.5 -v0 -u500 -o -t10 -q -y1.99 -f

[LOCAL]
path_local_phaser = /xtal/phaser_nightly/v2567/phaser_nightly
path_local_shelxe = /xtal/gottingen/bin/shelxe
path_local_arcimboldo = ARCIMBOLDO_BORGES

============================================Summary of your data=====================================================

SPACEGROUP: C 2 2 21
CELL DIMENSIONS: 123.32, 183.93, 35.29, 90.00, 90.00, 90.00
RESOLUTION: 1.99
NUMBER OF UNIQUE REFLECTIONS: 27772.00

2. STEP: Locating Sequentially the Fragments

Click here to follow the progress with the ARCIMBOLDO and the model 2y8p_pt70_0:

Time MODE: ARCIMBOLDO-SHREDDER STEP: CREATE_LINK 2016-11-24 14:24